Venice's iconic St Mark's Square was ordered closed on Sunday as the historic city suffered its third major flooding in less than a week, while rain lashing the rest of Italy prompted warnings in Florence and Pisa.

Venice's latest "acqua alta", or high water, hit 150 centimetres (just under five feet) on Sunday, lower than Tuesday's 187 centimetres -- the highest level in half a century -- but still dangerous.

Venice's mayor ordered St Mark's quared closed as the latest sea surge peaking at 1.54 metres (five feet) struck just before midday
Venice's mayor ordered St Mark's quared closed as the latest sea surge peaking at 1.54 metres (five feet) struck just before midday AFP / Filippo MONTEFORTE

"The water has stopped rising," tweeted mayor Luigi Brugnaro, who has estimated damage so far from the invading salt water at over one billion euros (dollars).

"High of 150 centimetres... Venice is working to restart," Brugnaro said after the sea water swamped the already devastated city where authorities have declared a state of emergency.

Churches, shops and homes in the city of canals have been inundated by unusually intense high water
Churches, shops and homes in the city of canals have been inundated by unusually intense high water AFP / Filippo MONTEFORTE

High tides were forecast to reach a maximum of 110 centimetres for the coming days, giving the authorities and citizens the opportunity to assess the damage as shops and Saint Mark's Square reopened late Sunday.

To the south, Tuscany president Enrico Rossi tweeted a warning of a "flood wave" on the Arno and said boards were being installed on the swollen river's banks in Pisa "as a precautionary measure".

The crisis, driven by bad weather, has prompted the government to release 20 million euros ($22 million) in funds to tackle the devastation
The crisis, driven by bad weather, has prompted the government to release 20 million euros ($22 million) in funds to tackle the devastation AFP / Filippo MONTEFORTE

The Italian army tweeted photos of paratroopers helping to bolster river defences in Pisa, with authorities monitoring the same river in Florence after heavy rain made it rise dramatically overnight.

Flooding from the Arno devastated Renaissance jewel Florence in 1966, killing around 100 people and destroying thousands of priceless works of art. On Sunday, civil protection units in Florence advised citizens "not to stand near the Arno's riverbanks".

Chart showing maximum documented high tide levels in Italy's Venice
Chart showing maximum documented high tide levels in Italy's Venice AFP / Gal ROMA

Firefighters tweeted footage of a hovercraft being deployed to rescue stranded citizens in southern Tuscany's Grossetano province.

Venice is home to a mere 50,000 residents but receives 36 million global visitors each year
Venice is home to a mere 50,000 residents but receives 36 million global visitors each year AFP / Filippo MONTEFORTE

St Mark's Square was already shut for several hours on Friday as strong storms and winds battered the region, leaving it submerged by sea surges.

Italy has declared a state of emergency for the UNESCO city where perilous deluges have caused millions of euros worth of damage
Italy has declared a state of emergency for the UNESCO city where perilous deluges have caused millions of euros worth of damage AFPTV / Sonia LOGRE

Churches, shops and homes have also been inundated in the Renaissance city, a UNESCO World Heritage site.

A massive infrastructure project called MOSE has been under way since 2003 to protect the city, but the multi-billion euro project has been plagued by cost overruns, corruption scandals and delays.

Churches, shops and homes have also been inundated in the city, a UNESCO World Heritage site
Churches, shops and homes have also been inundated in the city, a UNESCO World Heritage site AFP / Filippo MONTEFORTE

"We weren't expecting the high waters to be so exceptionally high," said Guido Fulgenzi, who had planned to open his cafe on St Mark's square this week.

"We're paying the price" for the MOSE project not being completed, he said, sloshing around in his flooded kitchen and pointing to Tuesday's high water mark on the wall.

The crisis has prompted the government to release 20 million euros ($22 million) in funds to tackle the devastation.

Culture Minister Dario Franceschini has warned that the task of repairing the city, where more than 50 churches have suffered damage, will be huge.

Residents whose houses have been hit are eligible for up to 5,000 euros in immediate government aid, while restaurant and shop owners can receive up to 20,000 euros and apply for more later.

Most of the city's cash machines were no longer working, making life even more difficult for tourists and Venetians.

"We didn't expect there to be so much water, now we're soaked," said French tourist Magali Mariolou, visiting Venice for her wedding anniversary.

"We'll come back another year when it's a bit drier. The boots are heavy, they're full of water!"

Older residents who remember the infamous "acqua alta" of 1966, when the water rose to 1.94 metres, say they have not seen such frequent flooding before.

Hotels reported cancelled reservations, some as far ahead as December, following the widespread diffusion of images of Venice underwater.

Tuesday's high waters submerged around 80 percent of the city, officials said.

Many, including Venice's mayor, have blamed the disaster on global warming and warned that the country, which is prone to natural disasters, must wake up to the risks posed by ever more volatile seasons.