Germany partially closed its borders with the Czech Republic and Austria's Tyrol on Sunday over a troubling surge in coronavirus mutations, drawing a swift rebuke from the European Union.

A thousand police officers were mobilised to ensure strict border checks, which recall the much-criticised early days of the pandemic when EU countries hastily closed their frontiers to each other.

The European Commission, eager to avoid a return to go-it-alone pandemic responses, has condemned Germany's newest restrictions and urged it to facilitate cross-border movement for commuters
The European Commission, eager to avoid a return to go-it-alone pandemic responses, has condemned Germany's newest restrictions and urged it to facilitate cross-border movement for commuters AFP / Odd ANDERSEN

At the Kiefersfelden crossing in southern Bavaria, masked officers in yellow high-visibility vests were out in sub-zero temperatures, stopping each vehicle coming from Austria.

Under the new rules, only Germans or non-German residents are allowed through, and they must provide a recent negative coronavirus test.

Some exceptions are allowed for essential workers in sectors such as health and transport, as well as for urgent humanitarian reasons, the German interior ministry has said.

A thousand German police officers have been mobilised to ensure strict border checks, which recall the much-criticised early days of the pandemic when EU countries hastily closed their frontiers to each other
A thousand German police officers have been mobilised to ensure strict border checks, which recall the much-criticised early days of the pandemic when EU countries hastily closed their frontiers to each other AFP / JENS SCHLUETER

Among those turned back was Austrian driver Irene, who said she would now have to make an hours-long detour.

"I only wanted to drive through Germany to go to Vienna," she told AFP. "This is a catastrophe, I have a dog in the car who is 15 years old... I don't know the way and I don't have GPS."

The restrictions are aimed at slowing the spread of more contagious variants that first emerged in Britain and South Africa, and have created new virus hotspots along the Czech border and in Austria's Tyrol region.

IMAGESGermany is implementing stricter measures to keep coronavirus variants at bay, by carrying out police checks at the German-Austrian border and banning travel from Czech border regions and Austria's Tyrol after a troubling surge in contagious mutatio
IMAGESGermany is implementing stricter measures to keep coronavirus variants at bay, by carrying out police checks at the German-Austrian border and banning travel from Czech border regions and Austria's Tyrol after a troubling surge in contagious mutations. AFPTV / Marko CUBRILO

At the German-Czech border crossing in Bad Gottleuba, a police spokesman said the checks had caused waiting times of around one hour, and that traffic was expected to be heavier from Monday.

The restrictions are aimed at slowing the spread of more contagious variants that first emerged in Britain and South Africa
The restrictions are aimed at slowing the spread of more contagious variants that first emerged in Britain and South Africa AFP / Christof STACHE

The European Commission, eager to avoid a return to go-it-alone pandemic responses, has condemned Germany's border restrictions.

"The fear of the coronavirus mutations is understandable," EU Health Commissioner Stella Kyriakides told Germany's Augsburger Allgemeine newspaper on Sunday.

"But the truth is that the virus cannot be stopped by closed borders," she said, adding that vaccines and following hygiene precautions were "the only things that work".

The restrictions recall the much-criticised early days of the pandemic when EU countries hastily closed their frontiers to each other
The restrictions recall the much-criticised early days of the pandemic when EU countries hastily closed their frontiers to each other AFP / JENS SCHLUETER

"I think it's wrong to return to a Europe with closed borders like we had in March 2020," she added.

German Interior Minister Horst Seehofer has rebuffed the criticism from Brussels.

"That's enough now," he told the top-selling Bild daily. The EU "has made enough mistakes" with its sluggish vaccine rollout, he said.

"We are fighting against the mutated virus at the Czech and Austrian borders. The EU Commission should support us... instead of putting stones in our path."

Bavarian premier Markus Soeder, speaking to reporters near the Czech border, also defended the checks.

"We are for a free Europe. But safety and protection must come first," he said.

German rail company Deutsche Bahn has suspended services to and from the affected areas.

At Frankfurt airport, the country's largest, federal police were checking passengers arriving from Vienna and Prague.

More than two months of shutdowns have brought down infection numbers in Germany, but Chancellor Angela Merkel's government recently decided to extend a partial lockdown until March 7 because of the risks posed by the variants.

In the Czech Republic, one of the hardest-hit countries in Europe, three cantons including two on the German border have been placed under lockdown due to the prevalence of the British virus variant.

Germany is also considering introducing checks at the border with the Moselle region in eastern France.

"For everyone not living in a hotspot it's reassuring to know that those in border regions are working hard to prevent the spread of the virus," said Soeder.